View the full list of my software projects and contributions on GitHub.

kbo

kbo is a local aligner that I am developing. kbo is based on converting plain k-mer matching results into approximate local alignment segments by looking at the longest common prefix length of the match (a k-bounded matching statistic).

• Run in browser: maklin.fi/kbo/
• Language: Rust
• License: Apache 2.0 and MIT dual license.

bxzstr

bxzstr is a C++ header-only library that extends the standard library iostream classes to read to/write from streams compressed with zlib, libbz2, liblzma, or zstd.

• Language: C++
• License: MPL-2.0.

mSWEEP

mSWEEP is a method for estimating the relative abundances of different bacterial organisms in a set of short-read DNA sequencing reads.

• Language: C++
• License: MIT license.

alignment-writer

alignment-writer is a library for compressing pseudoalignment files produced by the Themisto tool.

• Language: C++
• License: BSD 3-Clause.